Faculty

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Anton Valouev, PhD
Assistant Professor of Preventive Medicine
Preventive Medicine
NRT 1450 Biggy Street Health Sciences Campus Los Angeles
+1 323 442 7799

Publications

Peng JC, Valouev A, Liu N, Lin H. Piwi maintains germline stem cells and oogenesis in Drosophila through negative regulation of Polycomb group proteins. Nat Genet. 2016 Mar; 48(3):283-91. View in: PubMed

O'Brien LL, Guo Q, Lee Y, Tran T, Benazet JD, Whitney PH, Valouev A, McMahon AP. Differential regulation of mouse and human nephron progenitors by the Six family of transcriptional regulators. Development. 2016 Feb 15; 143(4):595-608. View in: PubMed

Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC. Copy number variation is a fundamental aspect of the placental genome. PLoS Genet. 2014 May; 10(5):e1004290. View in: PubMed

Valouev A, Weng Z, Sweeney RT, Varma S, Le QT, Kong C, Sidow A, West RB. Discovery of recurrent structural variants in nasopharyngeal carcinoma. Genome Res. 2014 Feb; 24(2):300-9. View in: PubMed

Merker JD, Valouev A, Gotlib J. Next-generation sequencing in hematologic malignancies: what will be the dividends? Ther Adv Hematol. 2012 Dec; 3(6):333-9. View in: PubMed

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Determinants of nucleosome organization in primary human cells. Nature. 2011 Jun 23; 474(7352):516-20. View in: PubMed

Ma Z, Swigut T, Valouev A, Rada-Iglesias A, Wysocka J. Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates. Nat Struct Mol Biol. 2011 Feb; 18(2):120-7. View in: PubMed

Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC. High-resolution human genome structure by single-molecule analysis. Proc Natl Acad Sci U S A. 2010 Jun 15; 107(24):10848-53. View in: PubMed

Gracey LE, Chen ZY, Maniar JM, Valouev A, Sidow A, Kay MA, Fire AZ. An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo. Epigenetics Chromatin. 2010; 3(1):13. View in: PubMed

Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, Sidow A, Wysocka J. Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell. 2009 Dec 24; 139(7):1290-302. View in: PubMed

Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res. 2009 Jun; 19(6):1044-56. View in: PubMed

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods. 2008 Sep; 5(9):829-34. View in: PubMed

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res. 2008 Jul; 18(7):1051-63. View in: PubMed

Li H, Valouev A, Schwartz DC, Waterman MS, Li LM. A quantile method for sizing optical maps. J Comput Biol. 2007 Apr; 14(3):255-66. View in: PubMed

Valouev A, Schwartz DC, Zhou S, Waterman MS. An algorithm for assembly of ordered restriction maps from single DNA molecules. Proc Natl Acad Sci U S A. 2006 Oct 24; 103(43):15770-5. View in: PubMed

Valouev A, Zhang Y, Schwartz DC, Waterman MS. Refinement of optical map assemblies. Bioinformatics. 2006 May 15; 22(10):1217-24. View in: PubMed

Valouev A, Li L, Liu YC, Schwartz DC, Yang Y, Zhang Y, Waterman MS. Alignment of optical maps. J Comput Biol. 2006 Mar; 13(2):442-62. View in: PubMed

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