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Huaiyu Mi, PhD
Associate Professor of Research Preventive Medicine
Preventive Medicine
NRT 2509F 1450 Biggy Street Health Sciences Campus Los Angeles
+1 323 442 7994


PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. Nucleic Acids Res. 2017 Jan 04; 45(D1):D183-D189. View in: PubMed

InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res. 2017 Jan 04; 45(D1):D190-D199. View in: PubMed

PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res. 2016 Jan 4; 44(D1):D336-42. View in: PubMed

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes. Database (Oxford). 2016; 2016. View in: PubMed

Regulation of pepc gene expression in Anabaena sp. PCC 7120 and its effects on cyclic electron flow around photosystem I and tolerances to environmental stresses. J Integr Plant Biol. 2015 May; 57(5):468-76. View in: PubMed

The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 2015 Jan 28; 43(Database issue):D213-21. View in: PubMed

Systems Biology Graphical Notation: Process Description language Level 1 Version 1. 3. J Integr Bioinform. 2015; 12(2):263. View in: PubMed

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J Integr Bioinform. 2015; 12(2):264. View in: PubMed

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1. 2. J Integr Bioinform. 2015; 12(2):265. View in: PubMed

Recombinant expression and functional analysis of a Chlamydomonas reinhardtii bacterial-type phosphoenolpyruvate carboxylase gene fragment. Biotechnol Lett. 2014 Apr; 36(4):821-7. View in: PubMed

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. Nucleic Acids Res. 2014 Jan 1; 42(1):D677-84. View in: PubMed

Large-scale gene function analysis with the PANTHER classification system. Nat Protoc. 2013 Aug; 8(8):1551-66. View in: PubMed

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res. 2013 Jan; 41(Database issue):D377-86. View in: PubMed

Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinformatics. 2012 Aug 1; 28(15):2016-21. View in: PubMed

InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 2012 Jan; 40(Database issue):D306-12. View in: PubMed

BioPAX support in CellDesigner. Bioinformatics. 2011 Dec 15; 27(24):3437-8. View in: PubMed

PharmGKB summary: dopamine receptor D2. Pharmacogenet Genomics. 2011 Jun; 21(6):350-6. View in: PubMed

Ontologies and standards in bioscience research: for machine or for human. Front Physiol. 2011; 2:5. View in: PubMed

The BioPAX community standard for pathway data sharing. Nat Biotechnol. 2010 Sep; 28(9):935-42. View in: PubMed

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res. 2010 Jan; 38(Database issue):D204-10. View in: PubMed

Dopamine genes and nicotine dependence in treatment-seeking and community smokers. Neuropsychopharmacology. 2009 Sep; 34(10):2252-64. View in: PubMed

The Systems Biology Graphical Notation. Nat Biotechnol. 2009 Aug; 27(8):735-41. View in: PubMed

A systems biology network model for genetic association studies of nicotine addiction and treatment. Pharmacogenet Genomics. 2009 Jul; 19(7):538-51. View in: PubMed

PANTHER pathway: an ontology-based pathway database coupled with data analysis tools. Methods Mol Biol. 2009; 563:123-40. View in: PubMed

Ontology annotation: mapping genomic regions to biological function. Curr Opin Chem Biol. 2007 Feb; 11(1):4-11. View in: PubMed

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res. 2007 Jan; 35(Database issue):D247-52. View in: PubMed

Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Res. 2006 Jul 1; 34(Web Server issue):W645-50. View in: PubMed

The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Res. 2005 Jan 1; 33(Database issue):D284-8. View in: PubMed

Assessment of genome-wide protein function classification for Drosophila melanogaster. Genome Res. 2003 Sep; 13(9):2118-28. View in: PubMed

PANTHER: a library of protein families and subfamilies indexed by function. Genome Res. 2003 Sep; 13(9):2129-41. View in: PubMed

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res. 2003 Jan 1; 31(1):334-41. View in: PubMed

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