Faculty

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Tatiana Valerievna Tatarinova, PhD
Research Associate Professor of Pathology (Part Time)
Pediatrics
CHL 4640 W. Sunset bl Off Campus Los Angeles
+1 323 361 8086

Overview

Tatiana Tatarinova is a researcher in the area of computational biology and the leader of Glamorgan Computational Biology Group GlaComBio, karate tournament fighter, winner of prestigious 2010 Nisei week tournament video , and a pop singer.

Awards

Paper on GC3 analysis was selected for presentation at 2011 ISMB/ECCB

Royal Society Travel Grant

NSF-AWM Grant

International Society for Computational Biology-National Science Foundation travel grant

Burrows-Wellcome Fund fellowship

Soros Foundation travel grant

Publications

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Calò CM, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, GaneshPrasad A, Hammer M, Matisoo-Smith L, Wells RS. Corrigendum: Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nat Commun. 2016 Oct 31; 7:13468. View in: PubMed

Tatarinova TV, Chekalin E, Nikolsky Y, Bruskin S, Chebotarov D, McNally KL, Alexandrov N. Nucleotide diversity analysis highlights functionally important genomic regions. Sci Rep. 2016 Oct 24; 6:35730. View in: PubMed

Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y, Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV. Toward high-resolution population genomics using archaeological samples. DNA Res. 2016 Aug; 23(4):295-310. View in: PubMed

Li WL, Buckley J, Sanchez-Lara PA, Maglinte DT, Viduetsky L, Tatarinova TV, Aparicio JG, Kim JW, Au M, Ostrow D, Lee TC, O'Gorman M, Judkins A, Cobrinik D, Triche TJ. A Rapid and Sensitive Next-Generation Sequencing Method to Detect RB1 Mutations Improves Care for Retinoblastoma Patients and Their Families. J Mol Diagn. 2016 Jul; 18(4):480-93. View in: PubMed

Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altinisik NE, Flegontova O, Gelfand MS, Gerasimov ES, Khrameeva EE, Konovalova OP, Neretina T, Nikolsky YV, Starostin G, Stepanova VV, Travinsky IV, Tríska M, Tríska P, Tatarinova TV. Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry. Sci Rep. 2016; 6:20768. View in: PubMed

Tatarinova TV, Lysnyansky I, Nikolsky YV, Bolshoy A. The mysterious orphans of Mycoplasmataceae. Biol Direct. 2016; 11(1):2. View in: PubMed

ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R. Genome-wide signatures of male-mediated migration shaping the Indian gene pool. J Hum Genet. 2015 Sep; 60(9):493-9. View in: PubMed

Elhaik E, Tatarinova TV, Klyosov AA, Graur D. Reply to Mendez et al: the 'extremely ancient' chromosome that still isn't. Eur J Hum Genet. 2015 May; 23(5):567-8. View in: PubMed

Kozlov K, Chebotarev D, Hassan M, Triska M, Triska P, Flegontov P, Tatarinova TV. Differential Evolution approach to detect recent admixture. BMC Genomics. 2015; 16 Suppl 8:S9. View in: PubMed

Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A. Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors. Biomed Res Int. 2015; 2015:786861. View in: PubMed

Elhaik E, Tatarinova TV, Klyosov AA, Graur D. The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome. Eur J Hum Genet. 2014 Sep; 22(9):1111-6. View in: PubMed

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS. Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nat Commun. 2014; 5:3513. View in: PubMed

Elhaik E, Pellegrini M, Tatarinova TV. Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa. BMC Bioinformatics. 2014; 15(1):23. View in: PubMed

Tatarinova T, Kryshchenko A, Triska M, Hassan M, Murphy D, Neely M, Schumitzky A. NPEST: a nonparametric method and a database for transcription start site prediction. Quant Biol. 2013 Dec; 1(4):261-271. View in: PubMed

Triska M, Grocutt D, Southern J, Murphy DJ, Tatarinova T. cisExpress: motif detection in DNA sequences. Bioinformatics. 2013 Sep 1; 29(17):2203-5. View in: PubMed

Sonkin D, Hassan M, Murphy DJ, Tatarinova TV. Tumor suppressors status in cancer cell line Encyclopedia. Mol Oncol. 2013 Aug; 7(4):791-8. View in: PubMed

Tatarinova T, Neely M, Bartroff J, van Guilder M, Yamada W, Bayard D, Jelliffe R, Leary R, Chubatiuk A, Schumitzky A. Two general methods for population pharmacokinetic modeling: non-parametric adaptive grid and non-parametric Bayesian. J Pharmacokinet Pharmacodyn. 2013 Apr; 40(2):189-99. View in: PubMed

Ahmad T, Sablok G, Tatarinova TV, Xu Q, Deng XX, Guo WW. Evaluation of codon biology in citrus and Poncirus trifoliata based on genomic features and frame corrected expressed sequence tags. DNA Res. 2013 Apr; 20(2):135-50. View in: PubMed

Tatarinova T, Elhaik E, Pellegrini M. Cross-species analysis of genic GC3 content and DNA methylation patterns. Genome Biol Evol. 2013; 5(8):1443-56. View in: PubMed

Pérez-Quintero AL, Sablok G, Tatarinova TV, Conesa A, Kuo J, López C. Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua. Biotechnol Lett. 2012 Apr; 34(4):737-45. View in: PubMed

de Vere N, Rich TC, Ford CR, Trinder SA, Long C, Moore CW, Satterthwaite D, Davies H, Allainguillaume J, Ronca S, Tatarinova T, Garbett H, Walker K, Wilkinson MJ. DNA barcoding the native flowering plants and conifers of Wales. PLoS One. 2012; 7(6):e37945. View in: PubMed

Bolshoy A, Tatarinova T. Methods of combinatorial optimization to reveal factors affecting gene length. Bioinform Biol Insights. 2012; 6:317-27. View in: PubMed

Jelliffe R, Neely M, Schumitzky A, Bayard D, Van Guilder M, Botnen A, Bustad A, Laing D, Yamada W, Bartroff J, Tatarinova T. Nonparametric population modeling and Bayesian analysis. Pharmacol Res. 2011 Oct; 64(4):426. View in: PubMed

Sablok G, Nayak KC, Vazquez F, Tatarinova TV. Synonymous codon usage, GC(3), and evolutionary patterns across plastomes of three pooid model species: emerging grass genome models for monocots. Mol Biotechnol. 2011 Oct; 49(2):116-28. View in: PubMed

Sablok G, Pérez-Quintero AL, Hassan M, Tatarinova TV, López C. Artificial microRNAs (amiRNAs) engineering - On how microRNA-based silencing methods have affected current plant silencing research. Biochem Biophys Res Commun. 2011 Mar 18; 406(3):315-9. View in: PubMed

Solovyev VV, Tatarinova TV. Towards the integration of genomics, epidemiological and clinical data. Genome Med. 2011; 3(7):48. View in: PubMed

Tatarinova TV, Alexandrov NN, Bouck JB, Feldmann KA. GC3 biology in corn, rice, sorghum and other grasses. BMC Genomics. 2010; 11:308. View in: PubMed

Troukhan M, Tatarinova T, Bouck J, Flavell RB, Alexandrov NN. Genome-wide discovery of cis-elements in promoter sequences using gene expression. OMICS. 2009 Apr; 13(2):139-51. View in: PubMed

Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol. 2009 Jan; 69(1-2):179-94. View in: PubMed

Tatarinova T, Bouck J, Schumitzky A. Kullback-Leibler Markov chain Monte Carlo--a new algorithm for finite mixture analysis and its application to gene expression data. J Bioinform Comput Biol. 2008 Aug; 6(4):727-46. View in: PubMed

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol Biol. 2006 Jan; 60(1):69-85. View in: PubMed

Schneeberger RG, Zhang K, Tatarinova T, Troukhan M, Kwok SF, Drais J, Klinger K, Orejudos F, Macy K, Bhakta A, Burns J, Subramanian G, Donson J, Flavell R, Feldmann KA. Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions. Funct Integr Genomics. 2005 Oct; 5(4):240-53. View in: PubMed

Tatarinova T, Brover V, Troukhan M, Alexandrov N. Skew in CG content near the transcription start site in Arabidopsis thaliana. Bioinformatics. 2003; 19 Suppl 1:i313-4. View in: PubMed

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