Liya Xu, PhD

Assistant Professor of Research Ophthalmology

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Overview

Dr. Liya Xu is a research ophthalmologist and ocular cancer investigator whose research focuses on developing liquid biopsy and multi-omics approaches to improve the diagnosis, risk stratification, and biological understanding of ocular malignancies. Her laboratory uses aqueous humor as a tumor-proximal source of molecular information and integrates genomic, epigenomic, fragmentomic, proteomic, and extracellular vesicle analyses to characterize tumor biology and disease evolution.

Her research spans both pediatric and adult ocular cancers, with a particular focus on retinoblastoma and uveal melanoma. In retinoblastoma, her work seeks to define genomic trajectories of tumor evolution and develop minimally invasive approaches for molecular characterization and clinical risk assessment. In uveal melanoma, her laboratory investigates the molecular features associated with early dissemination and metastatic risk by integrating tumor, aqueous humor, and circulating blood-based biomarkers.

A central goal of her research program is to establish liquid biopsy as a high-resolution molecular sensor of ocular and systemic disease, translating multi-omic discoveries into clinically useful biomarkers and precision tools for ocular oncology.

Awards

  • Knight Templar Eye Foundation (KTEF): Pediatric Ophthalmology Career-Starter Research Grant, 2021
     – 2023
  • The Saban Research Institute, Children’s Hospital Los Angeles: Research Career Development Award (RCDA), 2022
     – 2024
  • University of Southern California: Dean’s Pilot Research Award, 2024
     – 2025
  • University of Southern California: Wright Foundation, 2025
     – 2026

Research Funding

  • Dissecting Inter-Compartmental Tumor-Host Communication Driving Early Dissemination in Uveal Melanoma.
    NIH · R01CA311805 · May 5, 2026 – Apr 1, 2031 · Role: Principal Investigator
  • Establishing Cutoff for Minimal Residual Intraocular Disease in Retinoblastoma Using Extracellular Vesicles From Aqueous Humor Liquid Biopsy
    DoD · Aug 1, 2025 – Jul 31, 2028 · Role: Principle Investigator
  • Development of a Novel Aqueous Humor-Based Multiplex Assay for Uveal Melanoma Metastatic Risk Prediction
    NIH · R41CA291243 · Sep 5, 2024 – Aug 31, 2025 · Role: Principal Investigator

Research Keywords

  • Ocular Oncology
  • Liquid Biopsy
  • Cancer Genomics
  • Precision Oncology
  • Multi-Omics

Publications

  • Aqueous Humor Liquid Biopsy Identifies Murine Double Minute 4 Segmental Gain in Retinoblastoma: Implications for Chemotherapy Response and Precision Oncology. JCO Precis Oncol. 2025 Aug; 9:e2500250.. View in PubMed
  • Minimum Technical Preanalytical, Patient, and Clinical Context Data Elements for Cerebrospinal Fluid Liquid Biopsy: Recommendations for Public Database Submissions. JCO Precis Oncol. 2025 Jun; 9:e2400921.. View in PubMed
  • The use of aqueous humor cfDNA for low-pass whole genome sequencing as a clinical test to identify intraocular retinoblastoma recurrence. ScienceBank. 2025; 2025.. View in PubMed
  • Retinoblastoma: Aqueous humor liquid biopsy. Taiwan J Ophthalmol. 2025 Jan-Mar; 15(1):55-61.. View in PubMed
  • Safety Assessment of Aqueous Humor Liquid Biopsy in Retinoblastoma: A Multicenter Study of 1203 Procedures. Ophthalmology. 2026 03; 133(3):326-332.. View in PubMed
  • Dynamics of microRNA secreted via extracellular vesicles during the maturation of embryonic stem cell-derived retinal pigment epithelium. J Extracell Biol. 2024 Sep; 3(9):e70001.. View in PubMed
  • Single-cell somatic copy number alteration profiling of vitreous humor seeds in retinoblastoma. Ophthalmic Genet. 2024 12; 45(6):646-649.. View in PubMed
  • Aqueous VEGF-A Levels as a Liquid Biopsy Biomarker of Retinoblastoma Vitreous Seed Response to Therapy. Invest Ophthalmol Vis Sci. 2024 06 03; 65(6):18.. View in PubMed
  • Liquid Biopsy Profiling with Multiple Tests in Patients with Metastatic Breast Cancer. J Mol Pathol (Basel). 2024 Jun; 5(2):199-214.. View in PubMed
  • Isolation and Characterization of Extracellular Vesicles Through Orthogonal Approaches for the Development of Intraocular EV Therapy. Invest Ophthalmol Vis Sci. 2024 03 05; 65(3):6.. View in PubMed