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Jennifer Ann Cotter, MD

Associate Professor of Clinical Pathology

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Email [email protected]
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Publications

  • Genome-wide cfDNA fragmentation patterns in cerebrospinal fluid reflect medulloblastoma groups. NPJ Precis Oncol. 2025 Aug 12; 9(1):280.. View in PubMed
  • CNS methylation classifiers may misclassify normal developing cerebellar cortex as medulloblastoma. Acta Neuropathol. 2025 Jun 23; 149(1):66.. View in PubMed
  • Spatial Profiling Identifies Regionally Distinct Microenvironments and Targetable Immunosuppressive Mechanisms in Pediatric Osteosarcoma Pulmonary Metastases. Cancer Res. 2025 Jun 16; 85(12):2320-2337.. View in PubMed
  • Isocitrate dehydrogenase 1 primes group-3 medulloblastomas for cuproptosis. Cancer Cell. 2025 Jun 09; 43(6):1159-1174.e8.. View in PubMed
  • Lack of classical astroblastoma features in pediatric MN1::BEND2-fused brain tumors. Brain Pathol. 2025 Mar; 35(2):e13297.. View in PubMed
  • Spatial profiling identifies regionally distinct microenvironments and targetable immunosuppressive mechanisms in pediatric osteosarcoma pulmonary metastases. bioRxiv. 2025 Jan 24.. View in PubMed
  • Molecular, histologic, and clinical characterization of methylation class pleomorphic xanthoastrocytoma: An analysis of 469 tumors. Neurooncol Adv. 2025 Jan-Dec; 7(1):vdaf089.. View in PubMed
  • A comparative analysis of IDH-mutant glioma in pediatric, young adult, and older adult patients. Neuro Oncol. 2024 Dec 05; 26(12):2364-2376.. View in PubMed
  • Utility of OLIG2 immunostaining in pediatric brain tumors with embryonal morphology. J Neuropathol Exp Neurol. 2024 Dec 01; 83(12):1039-1046.. View in PubMed
  • Pediatric Chordoma: A Tale of Two Genomes. Mol Cancer Res. 2024 08 02; 22(8):721-729.. View in PubMed
  • Disease Evolution Monitored by Serial Cerebrospinal Fluid Liquid Biopsies in Two Cases of Recurrent Medulloblastoma. Int J Mol Sci. 2024 Apr 30; 25(9).. View in PubMed
  • Clinical, pathologic, and genomic characteristics of two pediatric glioneuronal tumors with a CLIP2::MET fusion. Acta Neuropathol Commun. 2024 04 22; 12(1):63.. View in PubMed
  • Elevated liver enzymes: unusual presentation of anti-MDA5 antibody-associated juvenile dermatomyositis. Clin Exp Rheumatol. 2024 Feb; 42(2):456-457.. View in PubMed
  • Developmental basis of SHH medulloblastoma heterogeneity. Nat Commun. 2024 01 08; 15(1):270.. View in PubMed
  • A method for measuring mitochondrial DNA copy number in pediatric populations. Front Pediatr. 2024; 12:1401737.. View in PubMed
  • Effective re-induction regimen for children with recurrent medulloblastoma. Neurooncol Adv. 2024 Jan-Dec; 6(1):vdae070.. View in PubMed
  • Hyaline protoplasmic astrocytopathy in epilepsy. Neuropathology. 2023 Dec; 43(6):441-456.. View in PubMed
  • Expansion of endogenous T cells in CSF of pediatric CNS tumor patients undergoing locoregional delivery of IL13R〿2-targeting CAR T cells: an interim analysis. Res Sq. 2023 Oct 23.. View in PubMed
  • Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS. Nucleic Acids Res. 2023 09 08; 51(16):8744-8757.. View in PubMed
  • Addendum: Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2023 May 19; 14:502.. View in PubMed
  • 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. Nat Commun. 2023 04 21; 14(1):2300.. View in PubMed
  • Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS. bioRxiv. 2023 Apr 11.. View in PubMed
  • Combined low-pass whole genome and targeted sequencing in liquid biopsies for pediatric solid tumors. NPJ Precis Oncol. 2023 Feb 20; 7(1):21.. View in PubMed
  • Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics. Neuro Oncol. 2023 01 05; 25(1):199-210.. View in PubMed
  • Low-pass whole-genome and targeted sequencing of cell-free DNA from cerebrospinal fluid in pediatric patients with central nervous system tumors. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdad077.. View in PubMed
  • The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Nat Genet. 2022 12; 54(12):1881-1894.. View in PubMed
  • Spectrum of paired-like homeobox 2b immunoexpression in pediatric brain tumors with embryonal morphology. Pathol Int. 2022 Aug; 72(8):402-410.. View in PubMed
  • Nests of dividing neuroblasts sustain interneuron production for the developing human brain. Science. 2022 01 28; 375(6579):eabk2346.. View in PubMed
  • Intraoperative Diagnosis for Pediatric Brain Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):10-22.. View in PubMed
  • Medulloblastoma: WHO 2021 and Beyond. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):23-33.. View in PubMed
  • Evaluation and Diagnosis of Central Nervous System Embryonal Tumors (Non-Medulloblastoma). Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):34-45.. View in PubMed
  • A Practical Approach to the Evaluation and Diagnosis of Pediatric CNS Tumors. Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):6-9.. View in PubMed
  • Histopathological patterns in atypical teratoid/rhabdoid tumors are related to molecular subgroup. Brain Pathol. 2021 09; 31(5):e12967.. View in PubMed
  • IDH-mutant brainstem gliomas in adolescent and young adult patients: Report of three cases and review of the literature. Brain Pathol. 2021 07; 31(4):e12959.. View in PubMed
  • Autopsy findings of previously described case of diffuse intrinsic pontine glioma-like tumor with EZHIP expression and molecular features of PFA ependymoma. Acta Neuropathol Commun. 2021 06 23; 9(1):113.. View in PubMed
  • Custom Pediatric Oncology Next-Generation Sequencing Panel Identifies Somatic Mosaicism in Archival Tissue and Enhances Targeted Clinical Care. Pediatr Neurol. 2021 01; 114:55-59.. View in PubMed
  • Clinical utility of comprehensive genomic profiling in central nervous system tumors of children and young adults. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab037.. View in PubMed
  • The spectrum of mitochondrial DNA (mtDNA) mutations in pediatric CNS tumors. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab074.. View in PubMed
  • Primary diffuse leptomeningeal glioneuronal tumors of the central nervous system: Report of three cases and review of literature. Pediatr Hematol Oncol. 2020 Apr; 37(3):248-258.. View in PubMed
  • An update on the central nervous system manifestations of tuberous sclerosis complex. Acta Neuropathol. 2020 04; 139(4):613-624.. View in PubMed
  • Expanding the spectrum of dicer1-associated sarcomas. Mod Pathol. 2020 01; 33(1):164-174.. View in PubMed
  • Novel TRIM24-MET Fusion in a Neonatal Brain Tumor. JCO Precis Oncol. 2019 Dec; 3:1-6.. View in PubMed
  • Case 1: An 11-year-old Girl with Depression and Electrolyte Disturbance. Pediatr Rev. 2019 Aug; 40(8):421-424.. View in PubMed
  • Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy. Oncotarget. 2019 Jan 11; 10(4):551-557.. View in PubMed
  • Fitting the epigenome into the picture: methylation classification for paediatric brain tumours. Neuropathol Appl Neurobiol. 2018 10; 44(6):543-547.. View in PubMed
  • Transmission of a TP53 germline mutation from unaffected male carrier associated with pediatric glioblastoma in his child and gestational choriocarcinoma in his female partner. Cold Spring Harb Mol Case Stud. 2018 04; 4(2).. View in PubMed
  • Palliative Care Options for a Young Adult Patient with a Diffuse Intrinsic Pontine Glioma. Cureus. 2017 Aug 18; 9(8):e1580.. View in PubMed
  • Novel GOPC(FIG)-ROS1 fusion in a pediatric high-grade glioma survivor. J Neurosurg Pediatr. 2017 Jul; 20(1):51-55.. View in PubMed
  • Extensive migration of young neurons into the infant human frontal lobe. Science. 2016 Oct 07; 354(6308).. View in PubMed
  • Clinico-pathological correlation in adenylate kinase 5 autoimmune limbic encephalitis. J Neuroimmunol. 2015 Oct 15; 287:31-5.. View in PubMed
  • Rates and characteristics of radiographically detected intracerebral cavernous malformations after cranial radiation therapy in pediatric cancer patients. J Child Neurol. 2015 Jun; 30(7):842-849.. View in PubMed
  • Primary glioblastoma of the trigeminal nerve root entry zone: case report. J Neurosurg. 2015 Jan; 122(1):78-81.. View in PubMed
  • Gangliogliomas of the optic pathway. J Clin Neurosci. 2014 Dec; 21(12):2244-9.. View in PubMed
  • Isolated intracerebral light chain deposition disease: novel imaging and pathologic findings. Clin Imaging. 2014 Nov-Dec; 38(6):868-71.. View in PubMed
  • Massive CNS monocytic infiltration at autopsy in an alemtuzumab-treated patient with NMO. Neurol Neuroimmunol Neuroinflamm. 2014 Oct; 1(3):e34.. View in PubMed

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