Jennifer Ann Cotter, MD

Associate Professor of Clinical Pathology

Image of Jennifer Ann Cotter, MD
Is this your profile? Click to edit


  • Pediatric Chordoma: A Tale of Two Genomes Mol Cancer Res. 2024 May 01. . View in PubMed
  • Disease Evolution Monitored by Serial Cerebrospinal Fluid Liquid Biopsies in Two Cases of Recurrent Medulloblastoma Int J Mol Sci. 2024 Apr 30; 25(9). . View in PubMed
  • Elevated liver enzymes: unusual presentation of anti-MDA5 antibody-associated juvenile dermatomyositis Clin Exp Rheumatol. 2024 Feb; 42(2):456-457. . View in PubMed
  • Developmental basis of SHH medulloblastoma heterogeneity Nat Commun. 2024 Jan 08; 15(1):270. . View in PubMed
  • A method for measuring mitochondrial DNA copy number in pediatric populations Front Pediatr. 2024; 12:1401737. . View in PubMed
  • Effective re-induction regimen for children with recurrent medulloblastoma Neurooncol Adv. 2024 Jan-Dec; 6(1):vdae070. . View in PubMed
  • Clinical, pathologic, and genomic characteristics of two pediatric glioneuronal tumors with a CLIP2::MET fusion Acta Neuropathol Commun. 2024 04 22; 12(1):63. . View in PubMed
  • Hyaline protoplasmic astrocytopathy in epilepsy Neuropathology. 2023 Dec; 43(6):441-456. . View in PubMed
  • Res Sq. 2023 Oct 23. . View in PubMed
  • Addendum: Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy Oncotarget. 2023 May 19; 14:502. . View in PubMed
  • Combined low-pass whole genome and targeted sequencing in liquid biopsies for pediatric solid tumors NPJ Precis Oncol. 2023 Feb 20; 7(1):21. . View in PubMed
  • Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics Neuro Oncol. 2023 01 05; 25(1):199-210. . View in PubMed
  • Low-pass whole-genome and targeted sequencing of cell-free DNA from cerebrospinal fluid in pediatric patients with central nervous system tumors Neurooncol Adv. 2023 Jan-Dec; 5(1):vdad077. . View in PubMed
  • 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma Nat Commun. 2023 04 21; 14(1):2300. . View in PubMed
  • Spectrum of paired-like homeobox 2b immunoexpression in pediatric brain tumors with embryonal morphology Pathol Int. 2022 Aug; 72(8):402-410. . View in PubMed
  • The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location Nat Genet. 2022 12; 54(12):1881-1894. . View in PubMed
  • Intraoperative Diagnosis for Pediatric Brain Tumors Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):10-22. . View in PubMed
  • Nests of dividing neuroblasts sustain interneuron production for the developing human brain Science. 2022 01 28; 375(6579):eabk2346. . View in PubMed
  • Evaluation and Diagnosis of Central Nervous System Embryonal Tumors (Non-Medulloblastoma) Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):34-45. . View in PubMed
  • Medulloblastoma: WHO 2021 and Beyond Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):23-33. . View in PubMed
  • A Practical Approach to the Evaluation and Diagnosis of Pediatric CNS Tumors Pediatr Dev Pathol. 2022 Jan-Feb; 25(1):6-9. . View in PubMed
  • Histopathological patterns in atypical teratoid/rhabdoid tumors are related to molecular subgroup Brain Pathol. 2021 09; 31(5):e12967. . View in PubMed
  • IDH-mutant brainstem gliomas in adolescent and young adult patients: Report of three cases and review of the literature Brain Pathol. 2021 07; 31(4):e12959. . View in PubMed
  • Custom Pediatric Oncology Next-Generation Sequencing Panel Identifies Somatic Mosaicism in Archival Tissue and Enhances Targeted Clinical Care Pediatr Neurol. 2021 01; 114:55-59. . View in PubMed
  • Autopsy findings of previously described case of diffuse intrinsic pontine glioma-like tumor with EZHIP expression and molecular features of PFA ependymoma Acta Neuropathol Commun. 2021 06 23; 9(1):113. . View in PubMed
  • The spectrum of mitochondrial DNA (mtDNA) mutations in pediatric CNS tumors Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab074. . View in PubMed
  • Clinical utility of comprehensive genomic profiling in central nervous system tumors of children and young adults Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab037. . View in PubMed
  • Primary diffuse leptomeningeal glioneuronal tumors of the central nervous system: Report of three cases and review of literature Pediatr Hematol Oncol. 2020 Apr; 37(3):248-258. . View in PubMed
  • An update on the central nervous system manifestations of tuberous sclerosis complex Acta Neuropathol. 2020 04; 139(4):613-624. . View in PubMed
  • Expanding the spectrum of dicer1-associated sarcomas Mod Pathol. 2020 01; 33(1):164-174. . View in PubMed
  • Novel TRIM24-MET Fusion in a Neonatal Brain Tumor JCO Precis Oncol. 2019 Dec; 3:1-6. . View in PubMed
  • Case 1: An 11-year-old Girl with Depression and Electrolyte Disturbance Pediatr Rev. 2019 Aug; 40(8):421-424. . View in PubMed
  • Sustained response of three pediatric BRAFV600E mutated high-grade gliomas to combined BRAF and MEK inhibitor therapy Oncotarget. 2019 Jan 11; 10(4):551-557. . View in PubMed
  • Fitting the epigenome into the picture: methylation classification for paediatric brain tumours Neuropathol Appl Neurobiol. 2018 10; 44(6):543-547. . View in PubMed
  • Transmission of a TP53 germline mutation from unaffected male carrier associated with pediatric glioblastoma in his child and gestational choriocarcinoma in his female partner Cold Spring Harb Mol Case Stud. 2018 04; 4(2). . View in PubMed
  • Palliative Care Options for a Young Adult Patient with a Diffuse Intrinsic Pontine Glioma Cureus. 2017 Aug 18; 9(8):e1580. . View in PubMed
  • Novel GOPC(FIG)-ROS1 fusion in a pediatric high-grade glioma survivor J Neurosurg Pediatr. 2017 Jul; 20(1):51-55. . View in PubMed
  • Extensive migration of young neurons into the infant human frontal lobe Science. 2016 Oct 07; 354(6308). . View in PubMed
  • Clinico-pathological correlation in adenylate kinase 5 autoimmune limbic encephalitis J Neuroimmunol. 2015 Oct 15; 287:31-5. . View in PubMed
  • Rates and characteristics of radiographically detected intracerebral cavernous malformations after cranial radiation therapy in pediatric cancer patients J Child Neurol. 2015 Jun; 30(7):842-849. . View in PubMed
  • Primary glioblastoma of the trigeminal nerve root entry zone: case report J Neurosurg. 2015 Jan; 122(1):78-81. . View in PubMed
  • Gangliogliomas of the optic pathway J Clin Neurosci. 2014 Dec; 21(12):2244-9. . View in PubMed
  • Isolated intracerebral light chain deposition disease: novel imaging and pathologic findings Clin Imaging. 2014 Nov-Dec; 38(6):868-71. . View in PubMed
  • Massive CNS monocytic infiltration at autopsy in an alemtuzumab-treated patient with NMO Neurol Neuroimmunol Neuroinflamm. 2014 Oct; 1(3):e34. . View in PubMed