Srikar Chamala, PhD

Associate Professor of Clinical Pathology

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Overview

Srikar Chamala, PhD, is an Associate Professor of Clinical Pathology at the Keck School of Medicine of USC. He also serves as Director of the Center for Pathology Informatics and Data Science at Children’s Hospital Los Angeles. The major areas of research interest include clinical genome informatics, cancer disparity informatics, pathology informatics and data analytics, and translational bioinformatics.

Education and Training

  • University of Florida, Gainesville, FL, USA — PhD — 05/2014 — Bioinformatics / Comparative Genomics
  • University of Illinois, Urbana-Champaign, IL, USA — MS — 05/2008 — Bioinformatics
  • Brigham Young University, Provo, UT, USA — BS — 12/2006 — Bioinformatics

Publications

  • Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants. Learn Health Syst. 2023 Oct; 7(4):e10385.. View in PubMed
  • Automated HL7v2 LRI informatics framework for streamlining genomics-EHR data integration. J Pathol Inform. 2023; 14:100330.. View in PubMed
  • A genomic data archive from the Network for Pancreatic Organ donors with Diabetes. Sci Data. 2023 05 26; 10(1):323.. View in PubMed
  • Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration. J Am Med Inform Assoc. 2023 02 16; 30(3):485-493.. View in PubMed
  • Transcriptional Profile of Human Pancreatic Acinar Ductal Metaplasia. Gastro Hep Adv. 2023; 2(4):532-543.. View in PubMed
  • Analysis of AVPR1A, thermal and pressure pain thresholds, and stress in sickle cell disease. Front Pain Res (Lausanne). 2022; 3:1060245.. View in PubMed
  • Development and application of a computable genotype model in the GA4GH Variation Representation Specification. Pac Symp Biocomput. 2023; 28:383-394.. View in PubMed
  • Maintaining informatics training learning outcomes with a COVID-19 era shift to a fully online flipped course. J Pathol Inform. 2023; 14:100162.. View in PubMed
  • Pharmacological inhibition and reversal of pancreatic acinar ductal metaplasia. Cell Death Discov. 2022 Sep 02; 8(1):378.. View in PubMed
  • The vaginal microbiome is associated with endometrial cancer grade and histology. Cancer Res Commun. 2022 06; 2(6):447-455.. View in PubMed