Ali Khoshnan, PhD

Associate Professor of Research Physiology and Neuroscience

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Overview

We study the molecular pathogenesis of Huntington’s disease (HD), a genetically inherited neurodegenerative disorder caused by expansion of a polyglutamine repeat in huntingtin protein (HTT). Mutant HTT is amyloidogenic and forms neurotoxic assemblies, which disrupt various signaling pathways and promote neurodegeneration. Patients develop debilitating motor, psychiatric, and cognitive symptoms.

Areas of interest

•Use human neurons, brain organoids, mice and Drosophila models to identify pathogenic assemblies of mutant HTT, study the mechanism of how assemblies spread and propagate in the nervous system, and characterize the neuronal pathways, which regulate neurodegeneration in HD.

•Produce and engineer antibodies and nanobodies targeting the pathogenic conformations of mutant HTT for diagnostic and therapeutic applications.

•Investigate the impact of microbiota-gut-brain pathways on the pathogenesis of HD in Drosophila and mouse models. In this project, we are characterizing the role of HTT in regulating microbial homeostasis in the gut, examining how mutant HTT disrupts these communications and triggers aberrant expression of genes implicated in brain development and physiology, and identifying the gut-brain circuits, which contribute to the onset of various HD symptoms.

•Develop gut-based therapies for HD.

Research Funding

  • Developing novel nanobody-based biosensors and therapeutics for Huntington?s Disease
    NIH · R21NS137242 · Apr 15, 2024 – Mar 31, 2026 · Role: Principal Investigator
  • Characterizing the Conformations and Neurotoxic Species of Huntingtin
    NIH · R01NS118859 · Jul 15, 2021 – Jun 30, 2026 · Role: Principal Investigator
  • Validation of IKKbeta as a therapeutic target for HD
    NIH · R01NS074374 · Sep 30, 2011 – Jun 30, 2017 · Role: Principal Investigator

Publications

  • Epitope-specific antibodies can distinguish between soluble huntingtin exon-1 and its diverse cellular aggregates. J Biol Chem. 2026 Feb; 302(2):111048.. View in PubMed
  • Gut Microbiota as a Modifier of Huntington’s Disease Pathogenesis. J Huntingtons Dis. 2024; 13(2):133-147.. View in PubMed
  • Corrigendum: Gut bacteria regulate the pathogenesis of Huntington’s disease in Drosophila model. Front Neurosci. 2022; 16:991513.. View in PubMed
  • Gut Bacteria Regulate the Pathogenesis of Huntington’s Disease in Drosophila Model. Front Neurosci. 2022; 16:902205.. View in PubMed
  • IKKβ signaling mediates metabolic changes in the hypothalamus of a Huntington disease mouse model. iScience. 2022 Feb 18; 25(2):103771.. View in PubMed
  • Amplification of neurotoxic HTTex1 assemblies in human neurons. Neurobiol Dis. 2021 11; 159:105517.. View in PubMed
  • Small, Seeding-Competent Huntingtin Fibrils Are Prominent Aggregate Species in Brains of zQ175 Huntington’s Disease Knock-in Mice. Front Neurosci. 2021; 15:682172.. View in PubMed
  • Identification of distinct conformations associated with monomers and fibril assemblies of mutant huntingtin. Hum Mol Genet. 2018 07 01; 27(13):2330-2343.. View in PubMed
  • IKKβ and mutant huntingtin interactions regulate the expression of IL-34: implications for microglial-mediated neurodegeneration in HD. Hum Mol Genet. 2017 11 01; 26(21):4267-4277.. View in PubMed
  • DJ-1 modulates aggregation and pathogenesis in models of Huntington’s disease. Hum Mol Genet. 2014 Feb 01; 23(3):755-66.. View in PubMed