Liya Xu, PhD

Assistant Professor of Research Ophthalmology

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Overview

Dr. Liya Xu is a research ophthalmologist and ocular cancer investigator whose research focuses on developing liquid biopsy and multi-omics approaches to improve the diagnosis, risk stratification, and biological understanding of ocular malignancies. Her laboratory uses aqueous humor as a tumor-proximal source of molecular information and integrates genomic, epigenomic, fragmentomic, proteomic, and extracellular vesicle analyses to characterize tumor biology and disease evolution.

Her research spans both pediatric and adult ocular cancers, with a particular focus on retinoblastoma and uveal melanoma. In retinoblastoma, her work seeks to define genomic trajectories of tumor evolution and develop minimally invasive approaches for molecular characterization and clinical risk assessment. In uveal melanoma, her laboratory investigates the molecular features associated with early dissemination and metastatic risk by integrating tumor, aqueous humor, and circulating blood-based biomarkers.

A central goal of her research program is to establish liquid biopsy as a high-resolution molecular sensor of ocular and systemic disease, translating multi-omic discoveries into clinically useful biomarkers and precision tools for ocular oncology.

Awards

  • Knight Templar Eye Foundation (KTEF): Pediatric Ophthalmology Career-Starter Research Grant, 2021
     – 2023
  • The Saban Research Institute, Children’s Hospital Los Angeles: Research Career Development Award (RCDA), 2022
     – 2024
  • University of Southern California: Dean’s Pilot Research Award, 2024
     – 2025
  • University of Southern California: Wright Foundation, 2025
     – 2026

Research Funding

  • Dissecting Inter-Compartmental Tumor-Host Communication Driving Early Dissemination in Uveal Melanoma.
    NIH · R01CA311805 · May 5, 2026 – Apr 1, 2031 · Role: Principal Investigator
  • Establishing Cutoff for Minimal Residual Intraocular Disease in Retinoblastoma Using Extracellular Vesicles From Aqueous Humor Liquid Biopsy
    DoD · Aug 1, 2025 – Jul 31, 2028 · Role: Principle Investigator
  • Development of a Novel Aqueous Humor-Based Multiplex Assay for Uveal Melanoma Metastatic Risk Prediction
    NIH · R41CA291243 · Sep 5, 2024 – Aug 31, 2025 · Role: Principal Investigator

Research Keywords

  • Ocular Oncology
  • Liquid Biopsy
  • Cancer Genomics
  • Precision Oncology
  • Multi-Omics

Publications

  • Malignant teratoid intraocular ciliary body medulloepithelioma in a 5-year-old male with corresponding somatic copy number alteration profile of aqueous humor cell-free DNA. Ophthalmic Genet. 2022 12; 43(6):855-861.. View in PubMed
  • Characterizing DNA methylation signatures of retinoblastoma using aqueous humor liquid biopsy. Nat Commun. 2022 09 21; 13(1):5523.. View in PubMed
  • Identification of epithelial and mesenchymal circulating tumor cells in clonal lineage of an aggressive prostate cancer case. NPJ Precis Oncol. 2022 Jun 21; 6(1):41.. View in PubMed
  • Disease characterization in liquid biopsy from HER2-mutated, non-amplified metastatic breast cancer patients treated with neratinib. NPJ Breast Cancer. 2022 Feb 18; 8(1):22.. View in PubMed
  • Aqueous Humor as a Liquid Biopsy for Retinoblastoma: Clear Corneal Paracentesis and Genomic Analysis. J Vis Exp. 2021 09 07.. View in PubMed
  • Treatment response and tumor evolution: lessons from an extended series of multianalyte liquid biopsies in a metastatic breast cancer patient. Cold Spring Harb Mol Case Stud. 2020 12; 6(6).. View in PubMed
  • Author Correction: SMURF-seq: efficient copy number profiling on long-read sequencers. Genome Biol. 2020 Aug 25; 21(1):214.. View in PubMed
  • Preanalytical Variables for the Genomic Assessment of the Cellular and Acellular Fractions of the Liquid Biopsy in a Cohort of Breast Cancer Patients. J Mol Diagn. 2020 03; 22(3):319-337.. View in PubMed
  • Aqueous Humor Is Superior to Blood as a Liquid Biopsy for Retinoblastoma. Ophthalmology. 2020 04; 127(4):552-554.. View in PubMed
  • SMURF-seq: efficient copy number profiling on long-read sequencers. Genome Biol. 2019 07 08; 20(1):134.. View in PubMed