Liya Xu, PhD

Assistant Professor of Research Ophthalmology

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Overview

Dr. Liya Xu is a research ophthalmologist and ocular cancer investigator whose research focuses on developing liquid biopsy and multi-omics approaches to improve the diagnosis, risk stratification, and biological understanding of ocular malignancies. Her laboratory uses aqueous humor as a tumor-proximal source of molecular information and integrates genomic, epigenomic, fragmentomic, proteomic, and extracellular vesicle analyses to characterize tumor biology and disease evolution.

Her research spans both pediatric and adult ocular cancers, with a particular focus on retinoblastoma and uveal melanoma. In retinoblastoma, her work seeks to define genomic trajectories of tumor evolution and develop minimally invasive approaches for molecular characterization and clinical risk assessment. In uveal melanoma, her laboratory investigates the molecular features associated with early dissemination and metastatic risk by integrating tumor, aqueous humor, and circulating blood-based biomarkers.

A central goal of her research program is to establish liquid biopsy as a high-resolution molecular sensor of ocular and systemic disease, translating multi-omic discoveries into clinically useful biomarkers and precision tools for ocular oncology.

Awards

  • Knight Templar Eye Foundation (KTEF): Pediatric Ophthalmology Career-Starter Research Grant, 2021
     – 2023
  • The Saban Research Institute, Children’s Hospital Los Angeles: Research Career Development Award (RCDA), 2022
     – 2024
  • University of Southern California: Dean’s Pilot Research Award, 2024
     – 2025
  • University of Southern California: Wright Foundation, 2025
     – 2026

Research Funding

  • Dissecting Inter-Compartmental Tumor-Host Communication Driving Early Dissemination in Uveal Melanoma.
    NIH · R01CA311805 · May 5, 2026 – Apr 1, 2031 · Role: Principal Investigator
  • Establishing Cutoff for Minimal Residual Intraocular Disease in Retinoblastoma Using Extracellular Vesicles From Aqueous Humor Liquid Biopsy
    DoD · Aug 1, 2025 – Jul 31, 2028 · Role: Principle Investigator
  • Development of a Novel Aqueous Humor-Based Multiplex Assay for Uveal Melanoma Metastatic Risk Prediction
    NIH · R41CA291243 · Sep 5, 2024 – Aug 31, 2025 · Role: Principal Investigator

Research Keywords

  • Ocular Oncology
  • Liquid Biopsy
  • Cancer Genomics
  • Precision Oncology
  • Multi-Omics

Publications

  • Preanalytical Variables for the Genomic Assessment of the Cellular and Acellular Fractions of the Liquid Biopsy in a Cohort of Breast Cancer Patients. J Mol Diagn. 2020 03; 22(3):319-337.. View in PubMed
  • Aqueous Humor Is Superior to Blood as a Liquid Biopsy for Retinoblastoma. Ophthalmology. 2020 04; 127(4):552-554.. View in PubMed
  • SMURF-seq: efficient copy number profiling on long-read sequencers. Genome Biol. 2019 07 08; 20(1):134.. View in PubMed
  • Genomic cfDNA Analysis of Aqueous Humor in Retinoblastoma Predicts Eye Salvage: The Surrogate Tumor Biopsy for Retinoblastoma. Mol Cancer Res. 2018 11; 16(11):1701-1712.. View in PubMed
  • Functional role of the intracellular loop linking transmembrane domains 6 and 7 of the human dipeptide transporter hPEPT1. J Membr Biol. 2010 Dec; 238(1-3):43-9.. View in PubMed
  • Mutagenesis and cysteine scanning of transmembrane domain 10 of the human dipeptide transporter. Pharm Res. 2009 Oct; 26(10):2358-66.. View in PubMed
  • Ethanol inhibits functional activity of the human intestinal dipeptide transporter hPepT1 expressed in Xenopus oocytes. Alcohol Clin Exp Res. 2008 May; 32(5):777-84.. View in PubMed